dsh-biomemory
cross-session memory for DeepSeek Harness v0.9.2:跨会话记忆(分层记录 · 分级审批 · 记忆代谢 · 结构化审计 · 纯本地 SQLite)。
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cross-session memory for DeepSeek Harness v0.9.2:跨会话记忆(分层记录 · 分级审批 · 记忆代谢 · 结构化审计 · 纯本地 SQLite)。
生物信息学「许愿式分析」插件:Python 执行器(bio_python:Biopython 全功能 + 出版级绘图)+ 49 个高频语义化工具(差异表达/GSEA、代谢建模/FBA、合成生物学设计、CRISPR、ML、文献检索等)+ 49 个 skill(1 主 skill + 17 领域配方 + 17 协议 + 5 研究方法 + 8 agent 指南)+ 零依赖自举 Python 环境(uv+venv 自动下载到插件私有目录)。用户下载安装即可许愿式分析。
DSH plugin: a persistent, per-session Python interpreter provisioned with Biomni's biomedical tool library, plus a Settings section that reports what the interpreter can actually do.
生信模式 (Bioinformatics Mode) — research-grade protein structure & interaction agent preset for DeepSeek Harness: AF2-Multimer, ESMFold, AutoDock Vina, MM-GBSA/MD, structure QA, virtual screening.
Bioinformatics skill router plugin for DeepSeek Harness: searchable index over a large skill library, an anysearch web-search provider, remote-exec tooling, and scenario guidance for literature review, bio-data analysis, and remote training
生物技术术语
基因编辑设计插件:sgRNA 候选枚举 + 评分向量(不打综合分)+ Cas-OFFinder 脱靶扫描(BSD-3)+ EditPlan 可审计账本 + 风险分级门控 | CRISPR / gene-editing design specialty plugin for dsh
基因组尺度代谢模型(GEM)构建插件:输入细菌全基因组(蛋白FASTA,支持多质粒/多染色体),自动构建+验证+补洞+出报告(SBML + 模型卡),供 dsh-bio-genie 消费工具加载使用 | Genome-scale metabolic model builder for dsh
蛋白质结构预测与设计插件:序列设计(ProteinMPNN/SolubleMPNN/LigandMPNN)、结构预测(ESMFold)、复合物界面筛选、序列理化打分与多样性聚类——零手动自举(本地 CPU/GPU 自适应),供 dsh-bio-genie 消费 | Protein structure prediction & design toolkit for dsh (sequence design, folding, interface screening)
DeepSeek Harness plugin for human microbiome function discovery. Turns a target enzyme, EC number, or substrate/product reaction into candidate discovery, literature-aware evidence integration, and experimental design.